3DEM Dataverse

This is a Dataverse for datasets associated with the 3D Electron Microscopy Neurotechnology Hub at 3DEM.org.

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1 to 5 of 5 Results

Data for "Dendritic spine density scales with microtubule number in rat hippocampal dendrites" Mar 9, 2022 Kuwajima, Masaaki; Harris, Kristen, 2022, "Data for "Dendritic spine density scales with microtubule number in rat hippocampal dendrites"", https://doi.org/10.18738/T8/PRAGLR, Texas Data Repository, V1 3DEM dataset acquired from the rat hippocampal area CA1 (stratum radiatum), used for the paper entitled "Dendritic spine density scales with microtubule number in rat hippocampal dendrites". This dataset consists of the following 2 parts: (1) serial section EM image series and tr...
Data for Point Scanning Super Resolution Imaging (PSSR) Feb 23, 2022 Fang, Linjing; Monroe, Fred; Novak, Sammy; Kirk, Lyndsey; Schiavon, Cara; Seungyoon, Yu; Zhang, Tong; Wu, Melissa; Kastner, Kyle; Latif, Alaa Abdel; Lin, Zijun; Shaw, Andrew; Kubota, Yoshiyuki; Zhang, Zhao; Pekkurnaz, Gulcin; Mendenhall, John; Harris, Kristen; Howard, Jeremy; Manor, Uri, 2019, "Data for Point Scanning Super Resolution Imaging (PSSR)", https://doi.org/10.18738/T8/YLCK5A, Texas Data Repository, V3 This data release contains pretrained models, all training and testing data for the PSSR paper published in Nature Methods: Deep learning-based point-scanning super-resolution imaging (https://dx.doi.org/10.1038/s41592-021-01080-z) Data are organized in two categories: - Main mod...
Data for shortened tethering filaments stabilize presynaptic vesicles in support of elevated release probability during LTP in rat hippocampus Mar 11, 2021 Jung, Jae Hoon; Kirk, Lyndsey M; Bourne, Jennifer N; Harris, Kristen M, 2021, "Data for shortened tethering filaments stabilize presynaptic vesicles in support of elevated release probability during LTP in rat hippocampus", https://doi.org/10.18738/T8/HBNM7H, Texas Data Repository, V1 Transmission electron tomographic datasets of hippocampal synapses for the control and LTP were acquired from hippocampal slices of male Long-Evans rats. The tilt images were taken at 1 degree tilt interval to about ± 60 degrees along a single tilt axis. The alignment of each set...
Structural plasticity of dendritic secretory compartments during LTP-induced synaptogenesis Sep 6, 2019 Harris, Kristen, 2019, "Structural plasticity of dendritic secretory compartments during LTP-induced synaptogenesis", https://doi.org/10.18738/T8/5TX9YA, Texas Data Repository, V2 This dataset consists of the following 3 parts: (1) a ReadMe.pdf that explains how to view the original image files, and trace files needed to see how the analyses were completed for this paper; (2) four 3DEM series (aligned tSEM images and trace files) analyzed using the Reconst...
3DEM dataset from a mouse hippocampus injected with rAAV to express ChR2-GFP and mAPEX2. Jul 24, 2019 Kuwajima, Masaaki, 2019, "3DEM dataset from a mouse hippocampus injected with rAAV to express ChR2-GFP and mAPEX2.", https://doi.org/10.18738/T8/QP43LB, Texas Data Repository, V1 3DEM dataset acquired from the hippocampal area CA1 (stratum radiatum) from an acute slice prepared from a mouse injected with rAAV to express ChR2-GFP and mAPEX2. Presynaptically expressed ChR2-GFP was used for optical induction of late-phase long-term potentiation in a subset o...

Data for "Dendritic spine density scales with microtubule number in rat hippocampal dendrites"

Mar 9, 2022

Kuwajima, Masaaki; Harris, Kristen, 2022, "Data for "Dendritic spine density scales with microtubule number in rat hippocampal dendrites"", https://doi.org/10.18738/T8/PRAGLR, Texas Data Repository, V1

3DEM dataset acquired from the rat hippocampal area CA1 (stratum radiatum), used for the paper entitled "Dendritic spine density scales with microtubule number in rat hippocampal dendrites". This dataset consists of the following 2 parts: (1) serial section EM image series and tr...

Data for Point Scanning Super Resolution Imaging (PSSR)

Feb 23, 2022

Fang, Linjing; Monroe, Fred; Novak, Sammy; Kirk, Lyndsey; Schiavon, Cara; Seungyoon, Yu; Zhang, Tong; Wu, Melissa; Kastner, Kyle; Latif, Alaa Abdel; Lin, Zijun; Shaw, Andrew; Kubota, Yoshiyuki; Zhang, Zhao; Pekkurnaz, Gulcin; Mendenhall, John; Harris, Kristen; Howard, Jeremy; Manor, Uri, 2019, "Data for Point Scanning Super Resolution Imaging (PSSR)", https://doi.org/10.18738/T8/YLCK5A, Texas Data Repository, V3

This data release contains pretrained models, all training and testing data for the PSSR paper published in Nature Methods: Deep learning-based point-scanning super-resolution imaging (https://dx.doi.org/10.1038/s41592-021-01080-z) Data are organized in two categories: - Main mod...

Data for shortened tethering filaments stabilize presynaptic vesicles in support of elevated release probability during LTP in rat hippocampus

Mar 11, 2021

Jung, Jae Hoon; Kirk, Lyndsey M; Bourne, Jennifer N; Harris, Kristen M, 2021, "Data for shortened tethering filaments stabilize presynaptic vesicles in support of elevated release probability during LTP in rat hippocampus", https://doi.org/10.18738/T8/HBNM7H, Texas Data Repository, V1

Transmission electron tomographic datasets of hippocampal synapses for the control and LTP were acquired from hippocampal slices of male Long-Evans rats. The tilt images were taken at 1 degree tilt interval to about ± 60 degrees along a single tilt axis. The alignment of each set...

Structural plasticity of dendritic secretory compartments during LTP-induced synaptogenesis

Sep 6, 2019

Harris, Kristen, 2019, "Structural plasticity of dendritic secretory compartments during LTP-induced synaptogenesis", https://doi.org/10.18738/T8/5TX9YA, Texas Data Repository, V2

This dataset consists of the following 3 parts: (1) a ReadMe.pdf that explains how to view the original image files, and trace files needed to see how the analyses were completed for this paper; (2) four 3DEM series (aligned tSEM images and trace files) analyzed using the Reconst...

3DEM dataset from a mouse hippocampus injected with rAAV to express ChR2-GFP and mAPEX2.

Jul 24, 2019

Kuwajima, Masaaki, 2019, "3DEM dataset from a mouse hippocampus injected with rAAV to express ChR2-GFP and mAPEX2.", https://doi.org/10.18738/T8/QP43LB, Texas Data Repository, V1

3DEM dataset acquired from the hippocampal area CA1 (stratum radiatum) from an acute slice prepared from a mouse injected with rAAV to express ChR2-GFP and mAPEX2. Presynaptically expressed ChR2-GFP was used for optical induction of late-phase long-term potentiation in a subset o...

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