Accompanying R analysis code, rawfiles, theoretical fragments and identified fragments for the manuscript: "Nucleo-SAFARI: An R Shiny Application for Automated Identification of Fragment Ions in Top Down MS/MS Spectra of Nucleic Acids" - Michael B. Lanzillotti and Jennifer S. Brodbelt This repository includes: - Nucleo-SAFARI code (.R) - let7 precursor (Unmodified, m5C 66, m6A 56) MS/MS (213 nm UVPD) and MS1 data (.raw) - 60 mer MS1 and MS/MS data (.raw) - Theoretical and identified fragment ions (.csv)
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1 to 4 of 4 Results
May 29, 2024
Lanzillotti, Michael, 2024, ".raw Spectrum Data", https://doi.org/10.18738/T8/TZCVR6, Texas Data Repository, V1
Associated rawfiles
May 29, 2024
Lanzillotti, Michael, 2024, "Theoretical fragment isotopic m/z values", https://doi.org/10.18738/T8/8KLJD6, Texas Data Repository, V1
.csv files containing theoretical fragment m/z values generated by Nucleo-SAFARI for let7 precursor and 60 mer DNA sequences.
May 29, 2024
Lanzillotti, Michael, 2024, "Identified fragment m/z values", https://doi.org/10.18738/T8/C18BEH, Texas Data Repository, V1
Isotopic m/z values of identified fragments from MS/MS spectra of let7 precursors and 60 mer DNA
May 29, 2024
Lanzillotti, Michael, 2024, "Nucleo-SAFARI Application", https://doi.org/10.18738/T8/C7WLFV, Texas Data Repository, V1
.R code comprising the Nucleo-SAFARI application, and R Shiny app for identification of nucleic acid MS/MS fragments by their isotopic distributions in the m/z domain.
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