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Keyword Term: enhancer Keyword Term: glioblastoma Author Name: Battenhouse, Anna

1 to 4 of 4 Results

RNA-seq whole-genome signal for GBM tumors and cell lines Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq whole-genome signal for GBM tumors and cell lines", https://doi.org/10.18738/T8/BEXKWJ, Texas Data Repository, V1 Whole-genome RNA-seq signal per million reads for primary GBM tumors and cell lines, as hg38 bigWig track files produced from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
RNA-seq expression quantification for GBM tumors and cell lines Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq expression quantification for GBM tumors and cell lines", https://doi.org/10.18738/T8/VVWHDG, Texas Data Repository, V1 RNA-seq expression quantification for GBM tumors and cell lines using Tuxedo suite tools Cuffquant, Cuffnorm and Cuffdiff starting from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq whole-genome signal for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/QOWYPD, Texas Data Repository, V1 Whole-genome GBM tumor ChIP-seq signal on hg38, input-corrected and normalized for sequencing depth, from MACS2 callpeak and bdgcmp commands used to produce signal track bigWig files. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
ChIP-seq peak calls for epigenetic marks in GBM tumors Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/YJMLKO, Texas Data Repository, V1 MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...

RNA-seq whole-genome signal for GBM tumors and cell lines

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq whole-genome signal for GBM tumors and cell lines", https://doi.org/10.18738/T8/BEXKWJ, Texas Data Repository, V1

Whole-genome RNA-seq signal per million reads for primary GBM tumors and cell lines, as hg38 bigWig track files produced from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

RNA-seq expression quantification for GBM tumors and cell lines

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq expression quantification for GBM tumors and cell lines", https://doi.org/10.18738/T8/VVWHDG, Texas Data Repository, V1

RNA-seq expression quantification for GBM tumors and cell lines using Tuxedo suite tools Cuffquant, Cuffnorm and Cuffdiff starting from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq whole-genome signal for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/QOWYPD, Texas Data Repository, V1

Whole-genome GBM tumor ChIP-seq signal on hg38, input-corrected and normalized for sequencing depth, from MACS2 callpeak and bdgcmp commands used to produce signal track bigWig files. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

ChIP-seq peak calls for epigenetic marks in GBM tumors

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/YJMLKO, Texas Data Repository, V1

MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...

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