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Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Orthologous Gene Group processing and summary statistics", https://doi.org/10.18738/T8/9QV1QV, Texas Data Repository Dataverse, V2
--orthoMCL_ENS.html: R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades. --MaxFinder_...
Adobe PDF - 150.2 KB - MD5: afbf4a09d852922c861a5769763e165e
R script that finds the gene with the largest log2fold change for each clade (positive or negative)using the normalized RPM, filters the name of that gene and generates a data frame with OrthoGroup, MaxLFC, and raw counts for these representative genes/OGGs for each species. In a...
Adobe PDF - 138.0 KB - MD5: 20a479153b7705983967fe0f4d917d07
R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades.
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Differential expression in monogamous versus non-monogamous species", https://doi.org/10.18738/T8/HFXGLP, Texas Data Repository Dataverse, V2, UNF:6:Z76y+AthWIZ8+C+gGQMfQg== [fileUNF]
--[evolutionary subgroup]_DESeq.csv: Differential expression of OGGs between monogamous/non-monogamous species for distinct evolutionary subgroups. Analyses were performed using DESeq2 (https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html)
Comma Separated Values - 272.6 KB - MD5: 8b6bc05944a7192ab6dcf15afcdb1056
Comma Separated Values - 271.8 KB - MD5: e3ef535c6ce0366e4a7b583d8b95c2d0
Comma Separated Values - 274.3 KB - MD5: 55e8268c07ad97ca9e475d6ef330b983
Comma Separated Values - 271.7 KB - MD5: c51423294947584d5ff61994cab15354
Mar 19, 2019 - Negation in San Juan Quiahije Chatino Sign Language: The Adoption and Adaptation of Negative Emblems
Mesh, Kate; Hou, Lynn, 2018, "Video Examples and Replication Data for: Negation in San Juan Quiahije Chatino Sign Language", https://doi.org/10.18738/T8/XUX25E, Texas Data Repository Dataverse, V2
This dataverse contains a coding manual and a dataset of annotated language, and a set of video examples for the following paper: Mesh, K. & Hou, L. (Under Review). Negation in San Juan Quiahije Chatino Sign Language: The integration and adaptation of conventional gestures. GESTU...
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