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Jan 12, 2020 - Large-Scale Networks
Wang, Haibo, 2018, "very large-scale networks", https://doi.org/10.18738/T8/YYHQLQ, Texas Data Repository Dataverse, V2
network nodes from 7500 to15000, density from 1% to 50%, weighted and unweighted
Dec 23, 2019 - UTA Libraries Dataverse
Wallace, Martin, 2018, "Maker Literacies Student Learning Data", https://doi.org/10.18738/T8/ZCZF6X, Texas Data Repository Dataverse, V3, UNF:6:7+VEu6f/pIn3j9+vvQslLA== [fileUNF]
Aggregated and deidentified pre- and post-self-evaluation survey data from the Maker Literacies pilot program, Fall 2017 through Fall 2018. The public version of the data includes self-evaluation data from 347 students enrolled in 27 unique courses spanning 13 disciplines at five...
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Differential expression analyses and novel candidate gene identification", https://doi.org/10.18738/T8/AMG5VD, Texas Data Repository Dataverse, V3
These scripts assess differential expression between monogamous and non-monogamous species between all clades and across evolutionary subgroupings. Different approaches to differential expression analysis were used to identify novel candidates associated with monogamy. --RRHO.htm...
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Novel candidates of monogamy in vertebrates", https://doi.org/10.18738/T8/8VMZB7, Texas Data Repository Dataverse, V2
Gene IDs, OGG group names, and Ensembl IDs for 24 novel candidate genes associated with monogamy across vertebrates
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Mating and ecological characteristics and their association with neural gene expression", https://doi.org/10.18738/T8/XYQVNU, Texas Data Repository Dataverse, V2
Scripts to compare within and between clade mating and ecological characteristics and their correlation with neural gene expression. --Eco_Mating_comparisonsHeatmaps.html: This markdown generates species and clade level ecology and mating system similarity heatmaps. --Expression_...
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Orthologous Gene Group processing and summary statistics", https://doi.org/10.18738/T8/9QV1QV, Texas Data Repository Dataverse, V2
--orthoMCL_ENS.html: R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades. --MaxFinder_...
Jun 5, 2019 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Differential expression in monogamous versus non-monogamous species", https://doi.org/10.18738/T8/HFXGLP, Texas Data Repository Dataverse, V2, UNF:6:Z76y+AthWIZ8+C+gGQMfQg== [fileUNF]
--[evolutionary subgroup]_DESeq.csv: Differential expression of OGGs between monogamous/non-monogamous species for distinct evolutionary subgroups. Analyses were performed using DESeq2 (https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html)
Mar 19, 2019 - Negation in San Juan Quiahije Chatino Sign Language: The Adoption and Adaptation of Negative Emblems
Mesh, Kate; Hou, Lynn, 2018, "Video Examples and Replication Data for: Negation in San Juan Quiahije Chatino Sign Language", https://doi.org/10.18738/T8/XUX25E, Texas Data Repository Dataverse, V2
This dataverse contains a coding manual and a dataset of annotated language used for a study titled, Negation in San Juan Quiahije Chatino Sign Language. In the corresponding paper, we analyze the use of negative emblems in a sign language used in an indigenous Chatino community...
Jan 29, 2019 - Haibo Wang Dataverse
Wang, Haibo, 2018, "Testbed for clique partitioning problems", https://doi.org/10.18738/T8/9EBL3A, Texas Data Repository Dataverse, V2
Testbed for working paper "Solving Clique Partitioning Problems: A Comparison of Models and Commercial Solvers"
Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates
Young, Rebecca, 2018, "Orthologous Gene Groups (OGGs) and their expression values", https://doi.org/10.18738/T8/CLHOFF, Texas Data Repository Dataverse, V1, UNF:6:zIUzNl1KhQQi8cPaQmTSRA== [fileUNF]
--refGroups_OrthoMCLoutput.txt: Orthologous Gene Groups (OGGs) identified by orthoMCL an ortholog calling software package (http://orthomcl.org/common/downloads/software/). Orthologous gene groups were generated for all proteins from available, closely-related reference proteomes...
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