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21 to 30 of 603 Results

Orthologous Gene Groups (OGGs) and their expression values Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Orthologous Gene Groups (OGGs) and their expression values", https://doi.org/10.18738/T8/CLHOFF, Texas Data Repository Dataverse, V1, UNF:6:zIUzNl1KhQQi8cPaQmTSRA== [fileUNF] --refGroups_OrthoMCLoutput.txt: Orthologous Gene Groups (OGGs) identified by orthoMCL an ortholog calling software package (http://orthomcl.org/common/downloads/software/). Orthologous gene groups were generated for all proteins from available, closely-related reference proteomes...
Species ecology and mating characteristics Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Species ecology and mating characteristics", https://doi.org/10.18738/T8/IWHEKH, Texas Data Repository Dataverse, V1 Ecological characteristics and mating system score for each species
Differential expression in monogamous versus non-monogamous species Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Differential expression in monogamous versus non-monogamous species", https://doi.org/10.18738/T8/HFXGLP, Texas Data Repository Dataverse, V1, UNF:6:Z76y+AthWIZ8+C+gGQMfQg== [fileUNF] --[evolutionary subgroup]_DESeq.csv: Differential expression of OGGs between monogamous/non-monogamous species for distinct evolutionary subgroups. Analyses were performed using DESeq2 (https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html)
Novel candidates of monogamy in vertebrates Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Novel candidates of monogamy in vertebrates", https://doi.org/10.18738/T8/8VMZB7, Texas Data Repository Dataverse, V1 Gene IDs, OGG group names, and Ensembl IDs for 24 novel candidate genes associated with monogamy across vertebrates
Clade-level orthologous gene groups Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Clade-level orthologous gene groups", https://doi.org/10.18738/T8/7CPUFF, Texas Data Repository Dataverse, V1 Python code that subsets the OGGs with all clades into clade-specific OGGs and Ensembl IDs
Orthologous Gene Group processing and summary statistics Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Orthologous Gene Group processing and summary statistics", https://doi.org/10.18738/T8/9QV1QV, Texas Data Repository Dataverse, V1 --orthoMCL_ENS.html: R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades. --MaxFinder_...
Differential expression analyses and novel candidate gene identification Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Differential expression analyses and novel candidate gene identification", https://doi.org/10.18738/T8/AMG5VD, Texas Data Repository Dataverse, V1 These scripts assess differential expression between monogamous and non-monogamous species between all clades and across evolutionary subgroupings. Different approaches to differential expression analysis were used to identify novel candidates associated with monogamy. --RRHO.htm...
Mating and ecological characteristics and their association with neural gene expression Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates Young, Rebecca, 2018, "Mating and ecological characteristics and their association with neural gene expression", https://doi.org/10.18738/T8/XYQVNU, Texas Data Repository Dataverse, V1 Scripts to compare within and between clade mating and ecological characteristics and their correlation with neural gene expression. --Eco_Mating_comparisonsHeatmaps.html: This markdown generates species and clade level ecology and mating system similarity heatmaps. --Expression_...
Transcriptomic Underpinnings of Monogamy in Vertebrates(University of Texas at Austin) Dec 11, 2018University of Texas at Austin Dataverse This dataverse contains datasets and scripts (R and Python) used in analyses and visualizations included in Young et al. "Conserved Transcriptomic Profiles Underpin Monogamy across Vertebrates." PNAS. Briefly, this study compared fore- and mid-brain transcriptomes of reproductive...
Trujillo (2019) Entropy Journal Article Dataverse(Texas State University) Dec 7, 2018Cognitive Electrophysiology Lab Dataverse Study materials, data, and analysis scripts for Trujillo, L.T. (2019), Entropy. K-th nearest neighbor (KNN) entropy estimates of complexity and integration from ongoing and stimulus-evoked electroencephalographic (EEG) recordings of the human brain. Entropy.

Orthologous Gene Groups (OGGs) and their expression values

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Orthologous Gene Groups (OGGs) and their expression values", https://doi.org/10.18738/T8/CLHOFF, Texas Data Repository Dataverse, V1, UNF:6:zIUzNl1KhQQi8cPaQmTSRA== [fileUNF]

--refGroups_OrthoMCLoutput.txt: Orthologous Gene Groups (OGGs) identified by orthoMCL an ortholog calling software package (http://orthomcl.org/common/downloads/software/). Orthologous gene groups were generated for all proteins from available, closely-related reference proteomes...

Species ecology and mating characteristics

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Species ecology and mating characteristics", https://doi.org/10.18738/T8/IWHEKH, Texas Data Repository Dataverse, V1

Ecological characteristics and mating system score for each species

Differential expression in monogamous versus non-monogamous species

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Differential expression in monogamous versus non-monogamous species", https://doi.org/10.18738/T8/HFXGLP, Texas Data Repository Dataverse, V1, UNF:6:Z76y+AthWIZ8+C+gGQMfQg== [fileUNF]

--[evolutionary subgroup]_DESeq.csv: Differential expression of OGGs between monogamous/non-monogamous species for distinct evolutionary subgroups. Analyses were performed using DESeq2 (https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html)

Novel candidates of monogamy in vertebrates

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Novel candidates of monogamy in vertebrates", https://doi.org/10.18738/T8/8VMZB7, Texas Data Repository Dataverse, V1

Gene IDs, OGG group names, and Ensembl IDs for 24 novel candidate genes associated with monogamy across vertebrates

Clade-level orthologous gene groups

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Clade-level orthologous gene groups", https://doi.org/10.18738/T8/7CPUFF, Texas Data Repository Dataverse, V1

Python code that subsets the OGGs with all clades into clade-specific OGGs and Ensembl IDs

Orthologous Gene Group processing and summary statistics

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Orthologous Gene Group processing and summary statistics", https://doi.org/10.18738/T8/9QV1QV, Texas Data Repository Dataverse, V1

--orthoMCL_ENS.html: R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades. --MaxFinder_...

Differential expression analyses and novel candidate gene identification

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Differential expression analyses and novel candidate gene identification", https://doi.org/10.18738/T8/AMG5VD, Texas Data Repository Dataverse, V1

These scripts assess differential expression between monogamous and non-monogamous species between all clades and across evolutionary subgroupings. Different approaches to differential expression analysis were used to identify novel candidates associated with monogamy. --RRHO.htm...

Mating and ecological characteristics and their association with neural gene expression

Dec 11, 2018 - Transcriptomic Underpinnings of Monogamy in Vertebrates

Young, Rebecca, 2018, "Mating and ecological characteristics and their association with neural gene expression", https://doi.org/10.18738/T8/XYQVNU, Texas Data Repository Dataverse, V1

Scripts to compare within and between clade mating and ecological characteristics and their correlation with neural gene expression. --Eco_Mating_comparisonsHeatmaps.html: This markdown generates species and clade level ecology and mating system similarity heatmaps. --Expression_...

Transcriptomic Underpinnings of Monogamy in Vertebrates(University of Texas at Austin)

Dec 11, 2018University of Texas at Austin Dataverse

This dataverse contains datasets and scripts (R and Python) used in analyses and visualizations included in Young et al. "Conserved Transcriptomic Profiles Underpin Monogamy across Vertebrates." PNAS. Briefly, this study compared fore- and mid-brain transcriptomes of reproductive...

Trujillo (2019) Entropy Journal Article Dataverse(Texas State University)

Dec 7, 2018Cognitive Electrophysiology Lab Dataverse

Study materials, data, and analysis scripts for Trujillo, L.T. (2019), Entropy. K-th nearest neighbor (KNN) entropy estimates of complexity and integration from ongoing and stimulus-evoked electroencephalographic (EEG) recordings of the human brain. Entropy.

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