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Switchgrass Genome Dataverse (University of Texas at Austin)
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Jan 7, 2021
MacQueen, Alice, 2021, "SNP and Annotation Data for Switchgrass genome paper", https://doi.org/10.18738/T8/ET9UAU, Texas Data Repository, V1
SNP data used for genome-wide association in the switchgrass genome paper. SNP data includes five sets of three SNP files (with the same filename, and .bed, .bim, and .fam file extensions), and two annotation data files.
Dec 13, 2020
Lovell, John; MacQueen, Alice; Napier, Joe, 2020, "Replication Data for: Switchgrass Genome Paper", https://doi.org/10.18738/T8/J377KE, Texas Data Repository, V1
R script containing the code to replicate the results of the switchgrass genome paper. Includes code to: a) run the neural network to assign ecotypes to switchgrass individuals, identified by PLANT_ID's (six character strings that typically begin with J), based on individuals wit...
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