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1 to 10 of 188 Results

ChIP-seq peak calls for epigenetic marks in GBM tumors Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", doi:10.18738/T8/YJMLKO, Texas Data Repository Dataverse, V1 MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...
Chromatin state model for epigenetic marks in GBM tumors Apr 13, 2018 - Glioblastoma epigenetic profiles Hall, Amelia Weber, 2018, "Chromatin state model for epigenetic marks in GBM tumors", doi:10.18738/T8/UNDRTW, Texas Data Repository Dataverse, V1 Chromatin state model based on CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications in 11 primary GBM tumors, produced by ChromHMM from binarized significant ChIP-seq peaks. See Methods section of doi:10.1158/0008-5472...
RNA-seq expression quantification for GBM tumors and cell lines Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq expression quantification for GBM tumors and cell lines", doi:10.18738/T8/VVWHDG, Texas Data Repository Dataverse, V1 RNA-seq expression quantification for GBM tumors and cell lines using Tuxedo suite tools Cuffquant, Cuffnorm and Cuffdiff starting from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq whole-genome signal for epigenetic marks in GBM tumors", doi:10.18738/T8/QOWYPD, Texas Data Repository Dataverse, V1 Whole-genome GBM tumor ChIP-seq signal on hg38, input-corrected and normalized for sequencing depth, from MACS2 callpeak and bdgcmp commands used to produce signal track bigWig files. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
RNA-seq whole-genome signal for GBM tumors and cell lines Apr 13, 2018 - Glioblastoma epigenetic profiles Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq whole-genome signal for GBM tumors and cell lines", doi:10.18738/T8/BEXKWJ, Texas Data Repository Dataverse, V1 Whole-genome RNA-seq signal per million reads for primary GBM tumors and cell lines, as hg38 bigWig track files produced from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
Glioblastoma epigenetic profiles(University of Texas at Austin) Apr 13, 2018 Supplemental processed data for publication: Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells. Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR. Cancer Res., 2018 March 16 [Epub ahead of print]. P...
Chapter 11.1. Effects of Future Eagle Ford Shale Play Development on Landscape Apr 11, 2018 - Spot-tailed Earless Lizard Wolaver, Brad , 2018, "Chapter 11.1. Effects of Future Eagle Ford Shale Play Development on Landscape", doi:10.18738/T8/1LLQCM, Texas Data Repository Dataverse, V1 An improved approach for forecasting ecological impacts from future drilling in unconventional shale oil and gas plays
X-ray CT Scans of a Lepisosteus osseus (Gar fish) (LAB-045) Apr 11, 2018 - UTCT Bio The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of a Lepisosteus osseus (Gar fish) (LAB-045)", doi:10.18738/T8/RJQBQR, Texas Data Repository Dataverse, V1 X-ray CT Scans of Warp corrected scans of a gar fish, Lepisosteus osseus (Field number LAB-045, Bayou LaBranche, St. Charles Parish, Louisiana. 22 March 2000, coll. Chris Scheible), for Dr. Julian Humphries. Scanned by Richard Ketcham on 1 December, 2000. The specimen was too lon...
X-ray CT Scans of the head of a preserved chimaera Hydrolagus colliei (Spotted Ratfish) Apr 11, 2018 - UTCT Bio The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of the head of a preserved chimaera Hydrolagus colliei (Spotted Ratfish)", doi:10.18738/T8/ZHXGB1, Texas Data Repository Dataverse, V1 X-ray CT Scans of the head of a preserved chimaera (Hydrolagus collie; San Juan Channel, Friday Harbor, WA; coll. 8/15/2001 by Adam Summers) for Timothy Rowe, Department of Geological Sciences, The University of Texas. Scanned by Richard Ketcham and Matthew Colbert 15 April 2002....
X-ray CT Scans of the head of Channa argus (Northern Snakehead ) Apr 11, 2018 - UTCT Bio The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of the head of Channa argus (Northern Snakehead )", doi:10.18738/T8/BZEGQM, Texas Data Repository Dataverse, V1 X-ray CT Scans of the head of Channa argus (ANSP uncatalogued) for Dr. Timothy Rowe of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 6 June 2005. Field of reconstruction = 73 mm; inter-slice spacing = 0.1544 mm for the original coronal slices and...

ChIP-seq peak calls for epigenetic marks in GBM tumors

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", doi:10.18738/T8/YJMLKO, Texas Data Repository Dataverse, V1

MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...

Chromatin state model for epigenetic marks in GBM tumors

Apr 13, 2018 - Glioblastoma epigenetic profiles

Hall, Amelia Weber, 2018, "Chromatin state model for epigenetic marks in GBM tumors", doi:10.18738/T8/UNDRTW, Texas Data Repository Dataverse, V1

Chromatin state model based on CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications in 11 primary GBM tumors, produced by ChromHMM from binarized significant ChIP-seq peaks. See Methods section of doi:10.1158/0008-5472...

RNA-seq expression quantification for GBM tumors and cell lines

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq expression quantification for GBM tumors and cell lines", doi:10.18738/T8/VVWHDG, Texas Data Repository Dataverse, V1

RNA-seq expression quantification for GBM tumors and cell lines using Tuxedo suite tools Cuffquant, Cuffnorm and Cuffdiff starting from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq whole-genome signal for epigenetic marks in GBM tumors", doi:10.18738/T8/QOWYPD, Texas Data Repository Dataverse, V1

Whole-genome GBM tumor ChIP-seq signal on hg38, input-corrected and normalized for sequencing depth, from MACS2 callpeak and bdgcmp commands used to produce signal track bigWig files. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

RNA-seq whole-genome signal for GBM tumors and cell lines

Apr 13, 2018 - Glioblastoma epigenetic profiles

Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq whole-genome signal for GBM tumors and cell lines", doi:10.18738/T8/BEXKWJ, Texas Data Repository Dataverse, V1

Whole-genome RNA-seq signal per million reads for primary GBM tumors and cell lines, as hg38 bigWig track files produced from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.

Glioblastoma epigenetic profiles(University of Texas at Austin)

Apr 13, 2018

Supplemental processed data for publication: Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells. Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR. Cancer Res., 2018 March 16 [Epub ahead of print]. P...

Chapter 11.1. Effects of Future Eagle Ford Shale Play Development on Landscape

Apr 11, 2018 - Spot-tailed Earless Lizard

Wolaver, Brad , 2018, "Chapter 11.1. Effects of Future Eagle Ford Shale Play Development on Landscape", doi:10.18738/T8/1LLQCM, Texas Data Repository Dataverse, V1

An improved approach for forecasting ecological impacts from future drilling in unconventional shale oil and gas plays

X-ray CT Scans of a Lepisosteus osseus (Gar fish) (LAB-045)

Apr 11, 2018 - UTCT Bio

The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of a Lepisosteus osseus (Gar fish) (LAB-045)", doi:10.18738/T8/RJQBQR, Texas Data Repository Dataverse, V1

X-ray CT Scans of Warp corrected scans of a gar fish, Lepisosteus osseus (Field number LAB-045, Bayou LaBranche, St. Charles Parish, Louisiana. 22 March 2000, coll. Chris Scheible), for Dr. Julian Humphries. Scanned by Richard Ketcham on 1 December, 2000. The specimen was too lon...

X-ray CT Scans of the head of a preserved chimaera Hydrolagus colliei (Spotted Ratfish)

Apr 11, 2018 - UTCT Bio

The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of the head of a preserved chimaera Hydrolagus colliei (Spotted Ratfish)", doi:10.18738/T8/ZHXGB1, Texas Data Repository Dataverse, V1

X-ray CT Scans of the head of a preserved chimaera (Hydrolagus collie; San Juan Channel, Friday Harbor, WA; coll. 8/15/2001 by Adam Summers) for Timothy Rowe, Department of Geological Sciences, The University of Texas. Scanned by Richard Ketcham and Matthew Colbert 15 April 2002....

X-ray CT Scans of the head of Channa argus (Northern Snakehead )

Apr 11, 2018 - UTCT Bio

The University of Texas High-Resolution X-ray CT Facility (UTCT), 2018, "X-ray CT Scans of the head of Channa argus (Northern Snakehead )", doi:10.18738/T8/BZEGQM, Texas Data Repository Dataverse, V1

X-ray CT Scans of the head of Channa argus (ANSP uncatalogued) for Dr. Timothy Rowe of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 6 June 2005. Field of reconstruction = 73 mm; inter-slice spacing = 0.1544 mm for the original coronal slices and...

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