Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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81 to 90 of 329 Results

Mng2_h3k4me1.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 5.0 MB - MD5: c18d202e462df79e8534995ed03e1017
Mng2_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.5 MB - MD5: a7e28b93a4e449b1820f0315ec08da2b
Mng2_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.4 MB - MD5: 44ba24365f038ebe361e0bc9c66df407
Mng2_h3k9me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 4.3 MB - MD5: 7f049d68905118021edc244cba6d6182
Aa1_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 21.0 MB - MD5: f6163ca2cb73f43de569d279890e1a46
Aa1_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 13.1 MB - MD5: 695043759203c9334a639929694e8bec
Aa1_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 4.9 MB - MD5: ced9dce5c698ee42a6d9caf81edb607d
Aa1_21_overlap.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 23.5 KB - MD5: 41c2d24cf750f18057a4d9b70b3f5066
Aa1_21_overlap.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 1.4 KB - MD5: 534af08aefeb2da0bdd87c7a7a28c99b
Aa1_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.0 KB - MD5: ffd485803854fcd4f69ece417e70913a

Mng2_h3k4me1.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 5.0 MB -

Mng2_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.5 MB -

Mng2_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.4 MB -

Mng2_h3k9me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 4.3 MB -

Aa1_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 21.0 MB -

Aa1_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 13.1 MB -

Aa1_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 4.9 MB -

Aa1_21_overlap.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 23.5 KB -

Aa1_21_overlap.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 1.4 KB -

Aa1_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.0 KB -

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