Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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281 to 290 of 334 Results

Gbm5_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 317.1 MB - MD5: 4edf9f2ce2e771a90ea4e1a1ae880041
Gbm5_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 295.0 MB - MD5: f282fda697cc265accb5347726efa3cf
Gbm5_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 410.9 MB - MD5: 81bddc8fb315951232a2fb9b68978850
Gbm5_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 431.7 MB - MD5: 280f68610120469599318bd8c682b770
Gbm5_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 151.5 MB - MD5: 27c39e3eadf8a3a7c6f1191fde045d2a
Gbm6_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 312.9 MB - MD5: 6f533e12a42eef9281f2a43d4afa1509
Gbm6_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 554.7 MB - MD5: 4a34ef42568adb736f313a23821841ad
Gbm6_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 591.1 MB - MD5: b71780f87100e3c6b891ab5b705e564f
Gbm6_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 577.9 MB - MD5: 267d51d8c3d25c0176f98989f840ff40
Gbm6_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 415.2 MB - MD5: f43df9c48cb2a9905d52b7ed565332de

Gbm5_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 317.1 MB -

Gbm5_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 295.0 MB -

Gbm5_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 410.9 MB -

Gbm5_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 431.7 MB -

Gbm5_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 151.5 MB -

Gbm6_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 312.9 MB -

Gbm6_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 554.7 MB -

Gbm6_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 591.1 MB -

Gbm6_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 577.9 MB -

Gbm6_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 415.2 MB -

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