Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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11 to 20 of 329 Results

Aa2_h3k4me1.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 5.8 MB - MD5: 3a90078e22ca9d99b216bf4d77b21a0f
Aa2_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.4 MB - MD5: f8773aa2659d5bf9616fb3fdfeec6ec8
Aa2_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 5.5 MB - MD5: 061ca55f64be87113deeac1d65b5bc1d
Aa2_h3k9me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.5 MB - MD5: a86455fab44d1e501f062de95d08fed4
Gbm1_ctcf.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.3 MB - MD5: c02580e2732c7379d38400df9fe62f5c
Gbm1_h3k27ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.4 MB - MD5: 6b2c5d2b02f57d4fe0a0ca20b1eacf4e
Gbm1_h3k27me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.1 MB - MD5: c3e89d502061ca9c8e88fe34cbf9c10f
Gbm1_h3k4me1.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.5 MB - MD5: b601c8013634dc6431e91727e2d83a20
Gbm1_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 10.4 MB - MD5: 1e2907111ce27565e57ea30a461d9512
Gbm1_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.2 MB - MD5: 64fe0591132cf35d42aecf18a3f8822e

Aa2_h3k4me1.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 5.8 MB -

Aa2_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.4 MB -

Aa2_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 5.5 MB -

Aa2_h3k9me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.5 MB -

Gbm1_ctcf.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.3 MB -

Gbm1_h3k27ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.4 MB -

Gbm1_h3k27me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.1 MB -

Gbm1_h3k4me1.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.5 MB -

Gbm1_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 10.4 MB -

Gbm1_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.2 MB -

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