Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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1 to 10 of 334 Results

ChIP-seq peak calls for epigenetic marks in GBM tumors Apr 13, 2018 Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/YJMLKO, Texas Data Repository, V1 MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...
Aa1_ctcf.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 4.6 MB - MD5: 4d41c12895793cdd5551d8cee00f29aa
Aa1_h3k27ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 5.1 MB - MD5: 8986db520000768a4ea07df7a8093171
Aa1_h3k27me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 6.9 MB - MD5: 851588bdce381da198f73c70ce1e9313
Aa1_h3k4me1.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.9 MB - MD5: 59646118d4a770d63912deba9b1ddbb2
Aa1_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.5 MB - MD5: b7507bf99f6bb8c06bfc4a1a227cd39c
Aa1_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 8.1 MB - MD5: 668792127ae5518139196a9541420991
Aa1_h3k9me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 8.6 MB - MD5: c84db9196714414b87b44b9c477abc8a
Aa2_ctcf.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 6.1 MB - MD5: 8feb943125e3aeb343bc2ecde1960ead
Aa2_h3k27ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 6.1 MB - MD5: 9a06b76edf715898d9a3290f611e3d88

ChIP-seq peak calls for epigenetic marks in GBM tumors

Apr 13, 2018

Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq peak calls for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/YJMLKO, Texas Data Repository, V1

MACS2 narrowPeak files from ChIP-seq experiments for 11 primary GBM tumors, each targeting CTCF transcription factor marks and H3K27Ac, H3K27Me3, H3K4Me1, H3K4Me3, H3K9Ac, and H3K9Me3 histone modifications. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more informa...

Aa1_ctcf.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 4.6 MB -

Aa1_h3k27ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 5.1 MB -

Aa1_h3k27me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 6.9 MB -

Aa1_h3k4me1.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.9 MB -

Aa1_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.5 MB -

Aa1_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 8.1 MB -

Aa1_h3k9me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 8.6 MB -

Aa2_ctcf.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 6.1 MB -

Aa2_h3k27ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 6.1 MB -

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