Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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Aa2_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 21.2 KB - MD5: f17a074049ec1d0700d82a7175c50d88
Aa2_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: 9ae8ef81edf4682f0052cbfe7cf99f9c
Aa2_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.1 KB - MD5: 48d4343a43ccfd5d475d6dc635a38b02
Aa2_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.8 KB - MD5: 3a91f7130ac145921eff25bf9b3c4d12
Aa2_21_segments.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 7.5 MB - MD5: 601454b822184b3fc107ac4e6c31c9ec
Aa2_21_segments.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 4.9 MB - MD5: 8b62982bbaaab52bade7079a91c0c8ea
emissions_21.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 14.2 KB - MD5: d200fb391c66d45bf2e9ea568cf24a0f
emissions_21.svg Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors SVG Image - 57.6 KB - MD5: 3f703cd711c3c542c50572639e266e59
emissions_21.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.1 KB - MD5: 831ab2cf7fddf3962973e3b653c35eaf
Gbm1_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 16.5 MB - MD5: 7337ddac4c75a6ec653f0d9c3b6da346

Aa2_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 21.2 KB -

Aa2_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Aa2_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Aa2_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Aa2_21_segments.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Aa2_21_segments.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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emissions_21.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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emissions_21.svg

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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emissions_21.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Gbm1_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 16.5 MB -

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