Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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131 to 140 of 329 Results

Gbm2_21_segments.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 6.3 MB - MD5: 29b2e875ea72eced978991828327f147
Gbm3_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 14.7 MB - MD5: 044139ed5da7b016b67420e6cf47746f
Gbm3_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 8.8 MB - MD5: 90c200f3cf019fcad54c59ab4a4351da
Gbm3_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 3.4 MB - MD5: 03d42fa58bd3cf5c4435efe906fb42d6
Gbm3_21_overlap.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 23.7 KB - MD5: ae343b16befbb80c12abaca072482572
Gbm3_21_overlap.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 1.5 KB - MD5: b3d72982db0a9520b8e06d2b42180e17
Gbm3_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 24.6 KB - MD5: ea36df49be0d645ca5bfe5e0ac073303
Gbm3_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: 9cae489f021a585e2782153896c611f4
Gbm3_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 24.8 KB - MD5: 2194ac98310821e94c84989678ee9266
Gbm3_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.8 KB - MD5: c8fb3a2a10f48a7a3a5ea05c350aebc9

Gbm2_21_segments.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 6.3 MB -

Gbm3_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 14.7 MB -

Gbm3_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 8.8 MB -

Gbm3_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 3.4 MB -

Gbm3_21_overlap.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 23.7 KB -

Gbm3_21_overlap.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 1.5 KB -

Gbm3_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 24.6 KB -

Gbm3_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.6 KB -

Gbm3_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 24.8 KB -

Gbm3_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.8 KB -

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