Supplemental processed data for publication:
Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Original sequencing data deposited at dbGaP, Study phs001389.

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231 to 240 of 334 Results
cuffnorm.genes.count_table.tissue
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 5.0 MB - MD5: fdfcc32451d6d3717a644fef1dace13e
cuffnorm.genes.count_table.tumor
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 4.4 MB - MD5: 97b1b66dfad7cff9a39f40cce2ce6c3e
cuffnorm.genes.fpkm_table.all
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 10.4 MB - MD5: af13b7635b759c96b58b6490023bf62b
cuffnorm.genes.fpkm_table.tissue
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 5.1 MB - MD5: 2ccf355859c3f2d76d53ecb112f50f5e
cuffnorm.genes.fpkm_table.tumor
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 4.6 MB - MD5: a011ebeaf26d5ab0e1bac9dff21acff1
ChIP-seq whole-genome signal for epigenetic marks in GBM tumors
Apr 13, 2018
Battenhouse, Anna; Hall, Amelia Weber, 2018, "ChIP-seq whole-genome signal for epigenetic marks in GBM tumors", https://doi.org/10.18738/T8/QOWYPD, Texas Data Repository, V1
Whole-genome GBM tumor ChIP-seq signal on hg38, input-corrected and normalized for sequencing depth, from MACS2 callpeak and bdgcmp commands used to produce signal track bigWig files. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
Aa1_ctcf.bdgcmp.FE.bw
Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors
Unknown - 549.7 MB - MD5: 942d123caa6e31cbe4f2615d13baee48
Aa1_h3k27ac.bdgcmp.FE.bw
Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors
Unknown - 618.8 MB - MD5: 4f93b234795153bfda4daf2bf2dfc99f
Aa1_h3k27me3.bdgcmp.FE.bw
Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors
Unknown - 495.8 MB - MD5: f76a1c4f45c447516dffbec2e88a2676
Aa1_h3k4me1.bdgcmp.FE.bw
Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors
Unknown - 645.0 MB - MD5: 28c6a864bdcfee0a650722385b48c977
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