Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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Gbm7_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.2 KB - MD5: bad38722e68941eb4e1c0e6553630ab4
Gbm7_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: cd2ed5beb3c1cef3d66a357deaee1490
Gbm7_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 21.0 KB - MD5: 68b70c44aaac481c8bfa6a9be1751729
Gbm7_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.7 KB - MD5: 585caedbd1e7daab47ff9a4758337f6d
Gbm7_21_segments.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 9.3 MB - MD5: 374341ecb3ebe02d4cb2b59607ef9734
Gbm7_21_segments.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 5.9 MB - MD5: 4588c3f7e568cb014fa8ec6b5aef2331
Gbm8_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 18.4 MB - MD5: dac52911d70fd2bfaa5abbae6ce24da7
Gbm8_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 11.8 MB - MD5: 48f1fc6fb2795be9bd81b36270324ca6
Gbm8_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 4.3 MB - MD5: 9fc593775bf18d673406e2a09233f929
Gbm8_21_overlap.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 23.8 KB - MD5: 8dd5cb45d9a9c611c564647757a19b71

Gbm7_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.2 KB -

Gbm7_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.6 KB -

Gbm7_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 21.0 KB -

Gbm7_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

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Gbm7_21_segments.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 9.3 MB -

Gbm7_21_segments.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 5.9 MB -

Gbm8_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 18.4 MB -

Gbm8_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 11.8 MB -

Gbm8_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 4.3 MB -

Gbm8_21_overlap.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 23.8 KB -

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