Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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Aa1_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: 46fa461d8878770d1001b684d420f37b
Aa1_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 24.9 KB - MD5: 5b253776b8d6526736184a81bf649cf8
Aa1_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.8 KB - MD5: 120462c7464b6a6a5ae4d794b520d194
Aa1_21_segments.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 9.7 MB - MD5: b7030c98766f72b1f6a3a36b04eab865
Aa1_21_segments.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 6.2 MB - MD5: 9505376dfc7e5fc97cfcc17b5c207515
Aa2_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 16.1 MB - MD5: 304f1dfe9141a5879c35fca14e892dee
Aa2_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 10.4 MB - MD5: c4ff39ac4811df407316703da402ab66
Aa2_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 3.8 MB - MD5: b0d52431255765702d281e88638cd869
Aa2_21_overlap.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 23.6 KB - MD5: fe3287eef7963a6a218cb724d114c32e
Aa2_21_overlap.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 1.5 KB - MD5: 2ede7831481c92d6eef555e0dd1102f1

Aa1_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.6 KB -

Aa1_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 24.9 KB -

Aa1_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.8 KB -

Aa1_21_segments.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 9.7 MB -

Aa1_21_segments.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 6.2 MB -

Aa2_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 16.1 MB -

Aa2_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 10.4 MB -

Aa2_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 3.8 MB -

Aa2_21_overlap.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 23.6 KB -

Aa2_21_overlap.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 1.5 KB -

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