Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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191 to 200 of 329 Results

Gbm8_21_overlap.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 1.4 KB - MD5: 17c295653e7f6dfde7ddaf2c9f0bb8e7
Gbm8_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.1 KB - MD5: 9d22082842ab7c6a1328d00fbe13af36
Gbm8_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: 71abe1e3fd48537ff6b796c22d44376c
Gbm8_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.3 KB - MD5: ff7ef39e163edb347b0522ad9c06cc6f
Gbm8_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.7 KB - MD5: d498d476d5cb934a497313dca03b38e4
Gbm8_21_segments.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 8.5 MB - MD5: 8ff8e7dc1ac5a0696124262fb417a373
Gbm8_21_segments.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 5.6 MB - MD5: 09b8d7912814f3b74acd31dde6b90de7
Gbm9_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 16.5 MB - MD5: 0487b79540321a523fafa93ab3501635
Gbm9_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 10.1 MB - MD5: f771bd0a2bf3d4d5ca6b210b7fe6d280
Gbm9_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 3.9 MB - MD5: 70e136966df267a8123f91986162cf3e

Gbm8_21_overlap.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 1.4 KB -

Gbm8_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.1 KB -

Gbm8_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.6 KB -

Gbm8_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.3 KB -

Gbm8_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.7 KB -

Gbm8_21_segments.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 8.5 MB -

Gbm8_21_segments.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 5.6 MB -

Gbm9_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 16.5 MB -

Gbm9_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 10.1 MB -

Gbm9_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 3.9 MB -

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