Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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211 to 220 of 334 Results

Mng2_21_dense.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 22.6 MB - MD5: 89a2928a95f8306e00dc77bfe00a560f
Mng2_21_dense.noe18.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 15.0 MB - MD5: 0b30f4934cbebc22042b9362fc8fc134
Mng2_21_expanded.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 5.3 MB - MD5: 762b0b01e6db481be1d9e429afe1a6a0
Mng2_21_overlap.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 23.7 KB - MD5: a1c27fc427aa6cc6c6483517013d7888
Mng2_21_overlap.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 1.4 KB - MD5: 41ce498f7414dae55db8e2357d89b32c
Mng2_21_RefSeqTES_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.4 KB - MD5: 76662c620cd4a4d1dda1722089ae9328
Mng2_21_RefSeqTES_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.6 KB - MD5: 05130c116f95c619e82e0baeb795382d
Mng2_21_RefSeqTSS_neighborhood.png Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PNG Image - 25.3 KB - MD5: 1fdf9a8d678457f0735980f2d3100a88
Mng2_21_RefSeqTSS_neighborhood.txt Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors Plain Text - 3.7 KB - MD5: 631075cf49e572bad1542d4df6d551ba
Mng2_21_segments.bed Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors PLINK Binary - 10.4 MB - MD5: 544a46d15f5fe65e7619dfe925764f4f

Mng2_21_dense.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 22.6 MB -

Mng2_21_dense.noe18.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 15.0 MB -

Mng2_21_expanded.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 5.3 MB -

Mng2_21_overlap.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 23.7 KB -

Mng2_21_overlap.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 1.4 KB -

Mng2_21_RefSeqTES_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.4 KB -

Mng2_21_RefSeqTES_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.6 KB -

Mng2_21_RefSeqTSS_neighborhood.png

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PNG Image - 25.3 KB -

Mng2_21_RefSeqTSS_neighborhood.txt

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

Plain Text - 3.7 KB -

Mng2_21_segments.bed

Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors

PLINK Binary - 10.4 MB -

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