Supplemental processed data for publication:
Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Original sequencing data deposited at dbGaP, Study phs001389.

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221 to 230 of 334 Results
Mng2_21_segments.noe18.bed
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
PLINK Binary - 7.0 MB - MD5: f7af75cc4e8366820c9b4553963dab7c
model_21.txt
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
Plain Text - 31.5 KB - MD5: 43f930a366e128a4bcd7de0b441f113c
transitions_21.png
transitions_21.png
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
PNG Image - 19.5 KB - MD5: 9a78ebc1d95064de2439cbba5f347075
transitions_21.svg
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
SVG Image - 64.7 KB - MD5: bc8eda828e96624933983ef3d1c78fbc
transitions_21.txt
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
Plain Text - 8.9 KB - MD5: 5db881360cb13dadc3e08c6c8824cb30
webpage_21.html
Apr 13, 2018 - Chromatin state model for epigenetic marks in GBM tumors
HTML - 9.7 KB - MD5: 231d2353697764f4f56223b423e636bd
RNA-seq expression quantification for GBM tumors and cell lines
Apr 13, 2018
Battenhouse, Anna; Hall, Amelia Weber, 2018, "RNA-seq expression quantification for GBM tumors and cell lines", https://doi.org/10.18738/T8/VVWHDG, Texas Data Repository, V1
RNA-seq expression quantification for GBM tumors and cell lines using Tuxedo suite tools Cuffquant, Cuffnorm and Cuffdiff starting from Tophat2-aligned BAMs. See Methods section of doi:10.1158/0008-5472.CAN-17-1724 for more information.
cuffdiff.MC_vs_PN.gene_expr.diff
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 7.2 MB - MD5: 8ca579915fe7004ed7cbee0d9c27539e
cuffnorm.genes.attr_table
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 4.5 MB - MD5: 31759703c8fab9d6eff30b14d2665f9f
cuffnorm.genes.count_table.all
Apr 13, 2018 - RNA-seq expression quantification for GBM tumors and cell lines
Unknown - 10.1 MB - MD5: 7e516745c33dec58811f703bc453695c
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