Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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241 to 250 of 334 Results

Aa1_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 532.8 MB - MD5: 177b132cba4cc96948b23459217e6b86
Aa1_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 545.5 MB - MD5: 4ca15fb94a8ec3fdbc015213f1ef3995
Aa1_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 447.3 MB - MD5: 34b54aa5276321527b1e3854b45aabe4
Aa2_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 495.2 MB - MD5: 1cdf52e7d4b49fb7bdb1e01016365077
Aa2_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 450.0 MB - MD5: 47dfe2a2ceba27264b23286f5a7f6964
Aa2_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 660.8 MB - MD5: 48bf72bfe5eb440419ce3f9908fe1a1e
Aa2_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 534.0 MB - MD5: 61fe3e4611769ab411918cf294a114ed
Aa2_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 456.5 MB - MD5: 0144f689a241408a172f070b422a21af
Aa2_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 489.5 MB - MD5: cf18a9b1ed9b421d687afab8dae29e29
Aa2_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 610.9 MB - MD5: 09adf5f7c65619932ecc515b4dc01c27

Aa1_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 532.8 MB -

Aa1_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 545.5 MB -

Aa1_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 447.3 MB -

Aa2_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 495.2 MB -

Aa2_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 450.0 MB -

Aa2_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 660.8 MB -

Aa2_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 534.0 MB -

Aa2_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 456.5 MB -

Aa2_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 489.5 MB -

Aa2_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 610.9 MB -

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