Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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251 to 260 of 334 Results

Gbm1_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 447.5 MB - MD5: f9f7e9bf0e17c48f5db301e74c7274d5
Gbm1_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 418.0 MB - MD5: 73ba21ffeced136feaaad26d8f10175d
Gbm1_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 454.0 MB - MD5: 7eb6e43592cb077830e3d29c941cf8a9
Gbm1_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 450.2 MB - MD5: 472e1b37a37d59608aff70ef68fdb6fc
Gbm1_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 78.6 MB - MD5: b919af2749d3aeabea07b06564559110
Gbm1_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 370.0 MB - MD5: d5493f1c63d3506d8dfa751774518afd
Gbm1_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 411.9 MB - MD5: e51a9831a02eb2c81b242495aa4373c1
Gbm2_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 412.2 MB - MD5: 40b04a559450af6587c6e81bd7f51f75
Gbm2_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 300.3 MB - MD5: 6ebf25ba97bf753c6304501ecabd1df4
Gbm2_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 318.4 MB - MD5: 40decf04663c189d7e7af1ff54e68328

Gbm1_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 447.5 MB -

Gbm1_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 418.0 MB -

Gbm1_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 454.0 MB -

Gbm1_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 450.2 MB -

Gbm1_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 78.6 MB -

Gbm1_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 370.0 MB -

Gbm1_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 411.9 MB -

Gbm2_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 412.2 MB -

Gbm2_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 300.3 MB -

Gbm2_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 318.4 MB -

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