Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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261 to 270 of 334 Results

Gbm2_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 331.8 MB - MD5: f9c87b82f2058b77ab5118b360b1cac8
Gbm2_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 439.6 MB - MD5: c4fd37c21f3e56baad6bc26975d5c276
Gbm2_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 478.7 MB - MD5: 6ad3f3761c6411c130594233680360a2
Gbm2_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 284.2 MB - MD5: b73c9784ecc22cb5de8d1206c26412a3
Gbm3_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 160.9 MB - MD5: dc1dffa00f5b8045be67d321ff5d9730
Gbm3_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 200.2 MB - MD5: de28641138a60634841bb5f21f01cf4c
Gbm3_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 143.3 MB - MD5: 9510bdfd49f59fcf2c5d9fb059f38001
Gbm3_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 205.7 MB - MD5: 8e6372ce923a480181334f8c4624eba5
Gbm3_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 108.1 MB - MD5: fb48e4069f020013a82b83b72aa2562b
Gbm3_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 192.9 MB - MD5: cab5c8739ce6148bc6389da4d7cc9ae0

Gbm2_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 331.8 MB -

Gbm2_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 439.6 MB -

Gbm2_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 478.7 MB -

Gbm2_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 284.2 MB -

Gbm3_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 160.9 MB -

Gbm3_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 200.2 MB -

Gbm3_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 143.3 MB -

Gbm3_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 205.7 MB -

Gbm3_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 108.1 MB -

Gbm3_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 192.9 MB -

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