Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

291 to 300 of 334 Results

Gbm6_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 551.4 MB - MD5: 8c1f29e45ff6c1687f05be8ce425a2dd
Gbm6_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 536.3 MB - MD5: 985230fb07da7a5b4ee7245a27529be3
Gbm7_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 560.3 MB - MD5: 9e9b40d4ff4d8ed1249635d618900d2a
Gbm7_h3k27ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 426.0 MB - MD5: e0d88877c771f2a5e1790efc15396f52
Gbm7_h3k27me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 538.7 MB - MD5: 2851246009a042fbeb64e9a3d908e5a9
Gbm7_h3k4me1.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 409.3 MB - MD5: 8b83b6454a70f3f60bd7b60a4773376f
Gbm7_h3k4me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 533.3 MB - MD5: 0ca9e1a61f69072c9271bfa5e0a42478
Gbm7_h3k9ac.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 454.0 MB - MD5: 788d4a3007f0da79be1a317753c6fa74
Gbm7_h3k9me3.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 585.8 MB - MD5: 399d331246e6241916bfc07d14d47153
Gbm8_ctcf.bdgcmp.FE.bw Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors Unknown - 676.3 MB - MD5: 68de9ae061ed30f0fd323b136489a039

Gbm6_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 551.4 MB -

Gbm6_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 536.3 MB -

Gbm7_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 560.3 MB -

Gbm7_h3k27ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 426.0 MB -

Gbm7_h3k27me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 538.7 MB -

Gbm7_h3k4me1.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 409.3 MB -

Gbm7_h3k4me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 533.3 MB -

Gbm7_h3k9ac.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 454.0 MB -

Gbm7_h3k9me3.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 585.8 MB -

Gbm8_ctcf.bdgcmp.FE.bw

Apr 13, 2018 - ChIP-seq whole-genome signal for epigenetic marks in GBM tumors

Unknown - 676.3 MB -

Add Data

Share Dataverse

Link Dataverse

Reset Modifications