Glioblastoma epigenetic profiles

Supplemental processed data for publication:

Bivalent chromatin domains in glioblastoma reveal a subtype-specific signature of glioma stem cells.
Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.
Cancer Res., 2018 March 16 [Epub ahead of print].
PMID: 29549165. doi: 10.1158/0008-5472.CAN-17-1724

Texas Data Repository DataSets include:

Peak calls: MACS2 narrowPeak files for primary GBM tumor ChIP-seq experiments (doi:10.18738/T8/YJMLKO).
Chromatin state: Outputs from ChromHMM chromatin state model, built from GBM tumor epigenetic and transcription factor marks (doi:10.18738/T8/UNDRTW).
Gene expression: Tuxedo suite RNA-seq quantification files for GBM tumors and cell lines, produced by Cuffquant, Cuffnorm and Cuffdiff (doi:10.18738/T8/VVWHDG).
Signal tracks: Normalized whole-genome ChIP-seq and RNA-seq bigWig signal tracks for hg38 (doi:10.18738/T8/QOWYPD, doi:10.18738/T8/BEXKWJ).

Original sequencing data deposited at dbGaP, Study phs001389.

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61 to 70 of 329 Results

Gbm7_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.7 MB - MD5: ea1e6a817f64c98a81f554e60b11525a
Gbm7_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 5.5 MB - MD5: 899621cf956d6f7c0f7d3632c147f1d4
Gbm7_h3k9me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.0 MB - MD5: e343e6d348ea5b27d4644fef32e15e62
Gbm8_ctcf.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 2.9 MB - MD5: 6d402c24b59de90ad342e9d0732e7d70
Gbm8_h3k27ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 6.2 MB - MD5: b78a70827f782fa790f4070377078f90
Gbm8_h3k27me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 4.4 MB - MD5: 79dd8259ee1ca23d50c4ca20866b66ca
Gbm8_h3k4me1.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 4.2 MB - MD5: 7a1a3cead8f1a08224fb1322ca460032
Gbm8_h3k4me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 1.8 MB - MD5: 1d24c31055caaecead904f52e0f0737a
Gbm8_h3k9ac.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.7 MB - MD5: c8d81fe00de5503bd2ed9100a4353b2e
Gbm8_h3k9me3.narrowPeak.gz Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors Gzip Archive - 3.6 MB - MD5: aae2ef8500f8560a8546099737ca48b4

Gbm7_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.7 MB -

Gbm7_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 5.5 MB -

Gbm7_h3k9me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.0 MB -

Gbm8_ctcf.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 2.9 MB -

Gbm8_h3k27ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 6.2 MB -

Gbm8_h3k27me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 4.4 MB -

Gbm8_h3k4me1.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 4.2 MB -

Gbm8_h3k4me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 1.8 MB -

Gbm8_h3k9ac.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.7 MB -

Gbm8_h3k9me3.narrowPeak.gz

Apr 13, 2018 - ChIP-seq peak calls for epigenetic marks in GBM tumors

Gzip Archive - 3.6 MB -

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