This dataverse contains datasets and scripts (R and Python) used in analyses and visualizations included in Young et al. 2019. "Conserved Transcriptomic Profiles Underpin Monogamy across Vertebrates." PNAS (https://www.pnas.org/content/116/4/1331.long) Briefly, this study compared fore- and mid-brain transcriptomes of reproductive males in monogamous and non-monogamous species pairs of Peromyscus mice, Microtus voles, passeroid birds, dendrobatid frogs, and Xenotilapia species of cichlid fishes. Fore- and mid-brain mRNA of reproductive males samples (n=3) were pooled and sequenced using an Illumina HiSeq 2500. Additional raw and processed data have been deposited in NCBI's Gene Expression Omnibus and are accessible through GEO Series accession number GSE123301: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123301 Species (abbreviation used for datasets): Microtus ochrogaster (Moch) M. pennsylvanicus (Mpen) Peromyscus californicus (Pcal) P. maniculatus (Pman) Anthus spinoletta (As) Prunella modularis (Dp) Ranitomeya imitator (Ri) Oophaga pumilio (Op) Xenotilapia spilotera (Xspil) X. ornatipinnis (Xorna)
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21 to 30 of 38 Results
Op_OGG.tab
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Tabular Data - 318.3 KB - 2 Variables, 8849 Observations - UNF:6:hY+uRKJB8sVp3P5aPHNQ4A==
Op_XenoCounts.txt
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Plain Text - 1.7 MB - MD5: c008abe147f507d9a7e23c8ea4f5d826
Pcal_OGG.tab
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Tabular Data - 500.4 KB - 2 Variables, 13924 Observations - UNF:6:XKZ+cQBpXV7X2G2sRb+Jqg==
Pcal_RatCounts
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Plain Text - 1.1 MB - MD5: db7d356d38cae8a2bedf23e068c43e1f
Pman_OGG.tab
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Tabular Data - 535.9 KB - 2 Variables, 14912 Observations - UNF:6:Sv3Gh3kKv1+CL62ICTvSOg==
Pman_RatCounts
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Plain Text - 1.3 MB - MD5: eda0757aece67eaa25190707dc4743ec
refGroups_OrthoMCLoutput.txt
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Plain Text - 1.6 MB - MD5: 69220f6e6c5a7c2f5ee8f7b22fd95dc5
Orthologous Gene Groups (OGGs) identified by orthoMCL an ortholog calling software package (http://orthomcl.org/common/downloads/software/)
Ri_OGG.tab
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Tabular Data - 365.3 KB - 2 Variables, 10159 Observations - UNF:6:XCFlbysSeWLMgGAm5YRVQQ==
Ri_XenoCounts.txt
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Plain Text - 1.7 MB - MD5: eb424bd6e96a2b35546f69bbe0ddd282
Xorna_OGG.tab
Dec 11, 2018 - Orthologous Gene Groups (OGGs) and their expression values
Tabular Data - 689.6 KB - 2 Variables, 19217 Observations - UNF:6:1sV4AG7SjwqwpIw3ABgq6A==
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